Input-output classes¶

`reader`¶

PDBx/mmCIF dictionary and data file parser.

Note

Acknowledgements:

The tokenizer used in this module is modeled after the clever parser design used in the PyMMLIB package.

PyMMLib Development Group:

class pdbx.reader.PdbxReader(input_file)[source]¶

PDBx reader for data files and dictionaries.

read(container_list)[source]¶

Appends to the input list of definition and data containers.

Parameters:	container_list (list) – list of `ContainerBase` containers to append to.

Classes for writing data and dictionary containers in PDBx/mmCIF format.

class pdbx.writer.PdbxWriter(output_file=<_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>)[source]¶

Write PDBx data files or dictionaries. Use the input container or container list.

set_row_partition(num_rows)[source]¶

Maximum number of rows checked for value length and format.

Parameters:	num_rows (int) – maximum number of rows

write(container_list)[source]¶

Write out a list of containers.

Parameters:	container_list (list) – list of `ContainerBase` objects to write.

write_container(container)[source]¶

Write out information for an individual container.

Parameters:	container (`ContainerBase`) – container to write